Integrated production, structural and functional annotations of an extracellular chitinase from Pseudomonas protegens CRML-4

Madiri, Rohini, P., Yedukondala Rao, Mugada, Naresh and Saeedi, Khadem Hussain ORCID: https://orcid.org/0000-0003-0386-8019 (2026) Integrated production, structural and functional annotations of an extracellular chitinase from Pseudomonas protegens CRML-4. Research Journal of Biotechnology, 21 (5). pp. 263-276. ISSN 2278-4535

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Abstract

Chitinases are hydrolytic enzymes that play a crucial role in the degradation of chitin, a major component of arthropod exoskeletons and fungal cell walls. This study focused on the isolation, purification and characterization of chitinase from Pseudomonas protegens strain CRML-4. The enzyme was produced using solid-state fermentation with colloidal chitin as an inducer. Crude chitinase was extracted and stepwise ammonium sulfate precipitation (20–80% saturation) revealed maximum protein content and chitinolytic activity in the 20% fraction. Further purification was achieved by gel filtration chromatography on a Sephadex G-100 column, with active fractions identified by co-elution of protein (A280) and enzymatic activity. The purified enzyme’s homogeneity was confirmed through reverse phase high performance liquid chromatography (RP-HPLC) and SDS-PAGE which indicated a single protein band of approximately 55 kDa. Peptide mass fingerprinting via MALDI-TOF-MS identified the enzyme as chitinase C, closely related to Pseudomonas aeruginosa with a 95% identity score. In silico characterization revealed the enzyme to be a stable, acidic protein (pI 5.22) with an aliphatic index of 81.04 and a predominance of random coil structures. Three-dimensional modelling supported by I-TASSER and Ramachandran plot validation confirmed structural reliability and gene ontology analysis linked the enzyme to extracellular chitin catabolic processes. These findings demonstrate that the chitinase from P. protegens CRML-4 is a homogeneous, stable enzyme with promising biotechnological and industrial applications in chitin bioconversion and biocontrol.

Item Type: Article
Uncontrolled Keywords: Chitinase | MALDI-TOF-MS | Pseudomonas protegens strain CRML-4 | RP-HPLC | SDS-PAGE
Subjects: Physical, Life and Health Sciences > Biology
Vol/Issue no. published date: May 2026
Depositing User: Mr. Syed Anas
Date Deposited: 21 May 2026 10:12
Last Modified: 21 May 2026 10:12
Official URL: https://doi.org/10.25303/215rjbt2630276
URI: https://pure.jgu.edu.in/id/eprint/11356

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